QuPath
Posted on 15 April 2019
Abstract from https://doi.org/10.1038/s41598-017-17204-5
QuPath is new bioimage analysis software designed to meet the growing need for a user-friendly, extensible, open-source solution for digital pathology and whole slide image analysis. In addition to offering a comprehensive panel of tumor identification and high-throughput biomarker evaluation tools, QuPath provides researchers with powerful batch-processing and scripting functionality, and an extensible platform with which to develop and share new algorithms to analyze complex tissue images. Furthermore, QuPath’s flexible design makes it suitable for a wide range of additional image analysis applications across biomedical research.
Type of tool: Image analysis software
Resource Created By: Pete Bankhead and Jose Fernandez
Is this tool open source?: Yes
You may also be interested in

SIMcheck
ImageJ tools for assessing SIM data quality
Micron Oxford

CellOrganizer
Model learning tools
Murphy Lab, Carnegie Mellon

CellProfiler
For measuring and analyzing cell images
Carpenter Lab, Broad Institute