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GerBI team forYoung Microscopists And Image Analysts (YMIA)

Posted by Friederike Kessel, on 30 March 2023

Dear young researchers, on behalf of the recently established team Young Microscopists and Image analysts (YMIA) under the The German Society for Microscopy and Image Analysis (BioImaging-Gesellschaft für Mikroskopie und Bildanalyse e.V. GerBI-GMB), we would like to cordially invite all interested actively working and aspiring microscopists and image analysts for the YMIA general meeting on the

Annotating 3D images in napari

Posted by Mara Lampert, on 30 March 2023

This blog post revolves around generating ground truth in 3D images for segmentation. Therefore, we will define what ground truth is and how we can generate it using napari in a time-efficient way. We will also learn about difficulties of annotating alone or in groups and address possible solutions for both. Challenges of image segmentation

Microscopy preprints – applications in cell and developmental biology

Posted by FocalPlane, on 29 March 2023

Here is a curated selection of preprints published recently. In this post, we share preprints that use microscopy tools in cell biology and developmental biology.

An interview with Mauricio Peñarrieta

Posted by Mariana De Niz, on 28 March 2023

MiniBio: Dr. Mauricio Peñarrieta is a group leader at the Faculty of Chemistry at Universidad Mayor de San Andres, focusing on food chemistry and natural products. He studied his undergraduate degree in Chemistry at the same university, where he first found his interest for organic chemistry, and where he first became familiar with natural product

Have you heard of Euro-BioImaging?

Posted by FocalPlane, on 23 March 2023

Euro-BioImaging is a scheme that sounds too good to be true: access to advanced microscopy technologies and the experts that are responsible for them, what’s not to like! The 35 imaging facilities, known as Nodes, that make up the infrastructure of Euro-BioImaging are located across 16 European countries and are accessible to all scientists regardless

Featured image with Alexis Lomakin

Posted by FocalPlane, on 22 March 2023

Our featured image, ‘Cellular highways’ shows a small group of rat liver epithelial cells IAR-2 and their internal organelles: the nucleus (cyan), cytoskeletal microtubules (magenta) and the Golgi apparatus (yellow). We caught up with Alexis Lomakin to find out more about the research behind the image.

An interview with Mary Cruz Torrico Rojas

Posted by Mariana De Niz, on 21 March 2023

MiniBio: Mary Cruz Torrico is the head of the Parasitology lab at Universidad Mayor de San Simón, in Cochabamba, Bolivia. She studied her BSc degree in Pharmaceutical Biochemistry at Universidad Mayor de San Simón. She then did a masters degree at the Free University of Brussels, Belgium. She is currently completing her PhD at the University of

Image checklists v1.0 from QUAREP-LiMi

Posted by Helen Zenner, on 16 March 2023

QUAREP-LiMi (Quality Assessment and Reproducibility for Instruments and Images in Light Microscopy) is a community group of light microscopists, science communicators, business representatives, vendors and application specialists aiming to improve both quality assessment and quality control in microscopy. QUAREP-LiMi is organised into (currently) 13 working groups, focusing on areas such as illumination power, lateral and

Microscopy preprints – new tool and techniques in imaging

Posted by FocalPlane, on 14 March 2023

Here is a curated selection of preprints posted recently on new tools and techniques in imaging. Let us know if we are missing any preprints that are on your reading list.

Euro-BioImaging User Forum: Cardiovascular Research

Posted by Marianna Poli, on 13 March 2023

Euro-BioImaging is organizing a fifth online User Forum on Tuesday, March 21, 2023, from 14:00-17:00 CET. The topic is “Cardiovascular research.” This event will highlight the importance of cutting-edge imaging technologies in support of cardiovascular health, disease, diagnostics and the development of therapies. We will showcase the specific expertise available at our Nodes across Europe

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Microscopy-related articles from our journals

Dynamics of intracellular cGMP during chemotaxis in Dictyostelium cells Journal of Cell Science 2023 136: jcs.260591
GliaMorph: a modular image analysis toolkit to quantify Müller glial cell morphology Development 2023 150: dev.201008
A novel class of sulphonamides potently block malaria transmission by targeting a Plasmodium vacuole membrane protein Disease Models & Mechanisms 2023 16: dmm.049950

Microscopy-related preprint highlights

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