Learning bioimage analysis resource list
Posted on 29 January 2019
A list of papers, websites, online books, videos and essential tools for getting started in bioimage analysis suggested by the Image Analysis Collaboratory at Harvard Medical School.
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μManager
For control of automated microscopes
Mark Tsuchida, Chris Weisiger & Nico Stuurman in the Vale Lab, UCSF
CellProfiler
For measuring and analyzing cell images
Carpenter Lab, Broad Institute
Bio-Formats
For reading proprietary image data and metadata
Open Microscopy Environment