Advertisement

BigStitcher

Posted on 7 August 2019

A software package, implemented in ImageJ, to stitch together multi-tile and multi-view datasets acquired by light sheet, confocal and widefield microscopy. Users can interact with images through the alignment process or BigStitcher can process images automatically. ‘How to’ videos are available here: https://www.youtube.com/playlist?list=PLNZz8lLDpAeVOeAmQWMrKGOeB3vv28yJE

Created by Preibisch Lab

Type of tool: Image analysis software

Website

Resource Created By: Preibisch Lab

Is this tool open source?: Yes

You may also be interested in

symbol for thumbnail

Microscopic Image Analyzer (MIA)

A software for deep learning based image analysis

Nils Körber

symbol for thumbnail

BisQue

Store, visualize, organize and analyze in the cloud

UCSB Center for Bio-image Informatics

symbol for thumbnail

SynapseNet: Deep Learning for Automatic Synapse Reconstruction

automatic synapse reconstruction and analysis in EM

Sarah Muth, Frederieke Moschref, Luca Freckmann, Sophia Mutschall, Ines Hojas-Garcia-Plaza, Julius N. Bahr, Arsen Petrovic, Thanh Thao Do, Valentin Schwarze, Anwai Archit, Kirsten Weyand, Susann Michanski, Lydia Maus, Cordelia Imig, Nils Brose, Carolin Wichmann, Ruben Fernandez-Busnadiego, Tobias Moser, Silvio O. Rizzoli, Benjamin H. Cooper, Constantin Pape