Advertisement

Icy

Posted on 28 January 2019

Icy is a free and open-source bioimage analysis software, founded by Institut Pasteur and France BioImaging, to visualise, annotate and quantify bioimage data. Icy integrates with ImageJ, Matlab and Micro Manager. The intuitive user interface allows biologists and developers to acquire, analyse and store their data in a reproducible/robust manner. There are over 200 plugins that can be used for microscope control, particle tracking, 3D segmentation, spot detection using wavelets and more.

Type of tool: Image analysis software

Website

Resource Created By: Quantitative Image Analysis Unit, Institut Pasteur

Is this tool open source?: Yes

You may also be interested in

symbol for thumbnail

NucleAIzer.org

A cell segmentation tool

Horvath Lab

symbol for thumbnail

SynapseNet: Deep Learning for Automatic Synapse Reconstruction

automatic synapse reconstruction and analysis in EM

Sarah Muth, Frederieke Moschref, Luca Freckmann, Sophia Mutschall, Ines Hojas-Garcia-Plaza, Julius N. Bahr, Arsen Petrovic, Thanh Thao Do, Valentin Schwarze, Anwai Archit, Kirsten Weyand, Susann Michanski, Lydia Maus, Cordelia Imig, Nils Brose, Carolin Wichmann, Ruben Fernandez-Busnadiego, Tobias Moser, Silvio O. Rizzoli, Benjamin H. Cooper, Constantin Pape

symbol for thumbnail

fairSIM

SIM reconstruction software

Marcel Müller, Viola Mönkemöller, Simon Hennig, Wolfgang Hübner, Thomas Huser