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Learning bioimage analysis resource list

Posted on 29 January 2019

A list of papers, websites, online books, videos and essential tools for getting started in bioimage analysis suggested by the Image Analysis Collaboratory at Harvard Medical School.

Type of tool: Image analysis software

Website

Is this tool open source?: Yes

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DL4MicEverywhere

Framework for deep learning-enhanced bioimage analysis

Iván Hidalgo-Cenalmor, Joanna W. Pylvänäinen, Mariana G. Ferreira, Craig T. Russell, Alon Saguy, Ignacio Arganda-Carreras, Yoav Shechtman, AI4Life Horizon Europe Program Consortium, Guillaume Jacquemet, Ricardo Henriques & Estibaliz Gómez-de-Mariscal

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fairSIM

SIM reconstruction software

Marcel Müller, Viola Mönkemöller, Simon Hennig, Wolfgang Hübner, Thomas Huser

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Weka

Data mining with open source machine learning software

University of Waikato