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Learning bioimage analysis resource list

Posted on 29 January 2019

A list of papers, websites, online books, videos and essential tools for getting started in bioimage analysis suggested by the Image Analysis Collaboratory at Harvard Medical School.

Type of tool: Image analysis software

Website

Is this tool open source?: Yes

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LLSpy

Python library for lattice light sheet data processing

Talley Lambert, Harvard Medical School

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LifeHack

Open-Source Microscope for Single Molecule Imaging

J Edwards, K Whitley, S Peneti, Y Cesbron, S Holden

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μManager

For control of automated microscopes

Mark Tsuchida, Chris Weisiger & Nico Stuurman in the Vale Lab, UCSF