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Learning bioimage analysis resource list

Posted on 29 January 2019

A list of papers, websites, online books, videos and essential tools for getting started in bioimage analysis suggested by the Image Analysis Collaboratory at Harvard Medical School.

Type of tool: Image analysis software

Website

Is this tool open source?: Yes

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QuPath

software for whole slide image analysis

Pete Bankhead and Jose Fernandez

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LLSpy-SLM

Python app for creating SLM masks for light sheet

Talley Lambert, Harvard Medical School

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CSBDeep

A toolbox for Content-aware Image Restoration (CARE)

Weigert M et al