Learning bioimage analysis resource list
Posted on 29 January 2019
A list of papers, websites, online books, videos and essential tools for getting started in bioimage analysis suggested by the Image Analysis Collaboratory at Harvard Medical School.
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Micro-Manager2 MacroExtensions
Allows ImageJ to access Micro-Manager2 functionalities
Jerome Mutterer
SynapseNet: Deep Learning for Automatic Synapse Reconstruction
automatic synapse reconstruction and analysis in EM
Sarah Muth, Frederieke Moschref, Luca Freckmann, Sophia Mutschall, Ines Hojas-Garcia-Plaza, Julius N. Bahr, Arsen Petrovic, Thanh Thao Do, Valentin Schwarze, Anwai Archit, Kirsten Weyand, Susann Michanski, Lydia Maus, Cordelia Imig, Nils Brose, Carolin Wichmann, Ruben Fernandez-Busnadiego, Tobias Moser, Silvio O. Rizzoli, Benjamin H. Cooper, Constantin Pape
Segment Anything for Microscopy
Vision Foundation Models for Bio-Image Segmentation
Anwai Archit, Luca Freckmann, Sushmita Nair, Nabeel Khalid, Paul Hilt, Vikas Rajashekhar, Marei Freitag, Carolin Teuber, Genevieve Buckley, Sebastian von Haaren, Sagnik Gupta, Andreas Dengel, Sheraz Ahmed, Constantin Pape