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Learning bioimage analysis resource list

Posted on 29 January 2019

A list of papers, websites, online books, videos and essential tools for getting started in bioimage analysis suggested by the Image Analysis Collaboratory at Harvard Medical School.

Type of tool: Image analysis software

Website

Is this tool open source?: Yes

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CLIJ2

GPU-accelerated image processing

Robert Haase, Loic Alain Royer, Peter Steinbach, Deborah Schmidt, Alexandr Dibrov, Uwe Schmidt, Martin Weigert, Nicola Maghelli, Pavel Tomancak, Florian Jug, Eugene W Myers

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Fluorescent Biosensor Database

Community-editable database of biosensors

Eric Greenwald and the Jin Zhang lab at UCSD

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Microscopic Image Analyzer (MIA)

A software for deep learning based image analysis

Nils Körber