pyCUDAdecon
Posted on 5 March 2019
This package provides a python wrapper and convenience functions for cudaDeconv, which is a CUDA/C++ implementation of an accelerated Richardson Lucy Deconvolution algorithm1, suitable for general applications, but designed particularly for stage-scanning light sheet applications such as Lattice Light Sheet. cudaDeconv was originally written by Lin Shao and modified by Dan Milkie, at Janelia Research campus. This package makes use of a cross-platform shared library interface that I wrote for cudaDecon while developing LLSpy (a Lattice light-sheet post-processing utility), that adds a couple additional kernels for affine transformations and camera corrections. The code here is mostly extracted from that package and cleaned up to allow it to be used independently of LLSpy.
Type of tool: Image analysis software
Resource Created By: Talley Lambert, Harvard Medical School
Is this tool open source?: Yes
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