Advertisement

OpenOrganelle

Posted on 29 August 2024

OpenOrganelle is a database for volume EM datasets and accompanying segmentations,  available for exploration. The ‘Organelle’ page shows the data arranged by segmented organelle and on the ‘Measurements’ page users can browse the surface area, volume or contact sites from the segmented organelles. Recently, the team have added a text search to improve browser experience.  OpenOrganelle is hosted by HHMI Janelia Research Campus.

Website

Type of tool: Database

Is this tool open source?: Yes

You may also be interested in

symbol for thumbnail

Segment Anything for Microscopy

Vision Foundation Models for Bio-Image Segmentation

Anwai Archit, Luca Freckmann, Sushmita Nair, Nabeel Khalid, Paul Hilt, Vikas Rajashekhar, Marei Freitag, Carolin Teuber, Genevieve Buckley, Sebastian von Haaren, Sagnik Gupta, Andreas Dengel, Sheraz Ahmed, Constantin Pape

symbol for thumbnail

The Microscopy and Microanalysis Facility Resource List

Resource list from a core at U of New Brunswick

Microscopy and Microanalysis Facility

symbol for thumbnail

Microscopic Image Analyzer (MIA)

A software for deep learning based image analysis

Nils Körber