OpenOrganelle
Posted on 29 August 2024
OpenOrganelle is a database for volume EM datasets and accompanying segmentations, available for exploration. The ‘Organelle’ page shows the data arranged by segmented organelle and on the ‘Measurements’ page users can browse the surface area, volume or contact sites from the segmented organelles. Recently, the team have added a text search to improve browser experience. OpenOrganelle is hosted by HHMI Janelia Research Campus.
You may also be interested in

Open Chemistry: What if we just give everything away?
Dyes from Luke Lavis's lab at Janelia

CellProfiler
For measuring and analyzing cell images
Carpenter Lab, Broad Institute

SynapseNet: Deep Learning for Automatic Synapse Reconstruction
automatic synapse reconstruction and analysis in EM
Sarah Muth, Frederieke Moschref, Luca Freckmann, Sophia Mutschall, Ines Hojas-Garcia-Plaza, Julius N. Bahr, Arsen Petrovic, Thanh Thao Do, Valentin Schwarze, Anwai Archit, Kirsten Weyand, Susann Michanski, Lydia Maus, Cordelia Imig, Nils Brose, Carolin Wichmann, Ruben Fernandez-Busnadiego, Tobias Moser, Silvio O. Rizzoli, Benjamin H. Cooper, Constantin Pape