AI in Microscopy: A BioImaging Guide
Posted on 27 August 2026
AI in Microscopy is an interactive online textbook intended to introduce biologists and microscopists to the fundamentals of artificial intelligence and machine learning.
The source code for this textbook is available on GitHub. All content is licensed under BSD 3-Clause, except where noted otherwise.
AI in Microscopy is currently under construction and some chapters are incomplete. This page will continue to be updated as the textbook progresses.
Resource Created By: Editors: Teng-Leong Chew, Rachel Lee, Owen Puls at HHMI Janelia Research Campus
Learning material type:
You may also be interested in
Fiji Image Processing and Analysis Workshop
PDF slides and reference list
PDF slides and reference list
Seven Steps to FAIRness Illustrations by Marie Held
Postcards on the step to FAIR data sharing
Marie Held
UltraMicroscope II – A User Guide
LaVision BioTec UltraMicroscope II Guide
P Ariel