AI in Microscopy: A BioImaging Guide
Posted on 27 August 2026
AI in Microscopy is an interactive online textbook intended to introduce biologists and microscopists to the fundamentals of artificial intelligence and machine learning.
The source code for this textbook is available on GitHub. All content is licensed under BSD 3-Clause, except where noted otherwise.
AI in Microscopy is currently under construction and some chapters are incomplete. This page will continue to be updated as the textbook progresses.
Resource Created By: Editors: Teng-Leong Chew, Rachel Lee, Owen Puls at HHMI Janelia Research Campus
Learning material type:
You may also be interested in
Young Microscopists and Image Analysts (YMIA) YouTube channel
Videos from the YMIA community
YMIA
Analyzing Fluorescence Microscopy Images with ImageJ
An online ImageJ textbook
Pete Bankhead
Addgene Blogposts on Fluorescent Proteins
Lots of blog posts from leaders in the FP field
