Advertisement

AI in Microscopy: A BioImaging Guide

Posted on 27 August 2026

AI in Microscopy is an interactive online textbook intended to introduce biologists and microscopists to the fundamentals of artificial intelligence and machine learning.

The source code for this textbook is available on GitHub. All content is licensed under BSD 3-Clause, except where noted otherwise.

AI in Microscopy is currently under construction and some chapters are incomplete. This page will continue to be updated as the textbook progresses.

Website

Resource Created By: Editors: Teng-Leong Chew, Rachel Lee, Owen Puls at HHMI Janelia Research Campus

Learning material type:

You may also be interested in

symbol for thumbnail

Young Microscopists and Image Analysts (YMIA) YouTube channel

Videos from the YMIA community

YMIA

symbol for thumbnail

Analyzing Fluorescence Microscopy Images with ImageJ

An online ImageJ textbook

Pete Bankhead

symbol for thumbnail

Addgene Blogposts on Fluorescent Proteins

Lots of blog posts from leaders in the FP field