CellCognition
Posted on 19 September 2019
Free and open-source software for the analysis of high content screens collecting live cell imaging data. CellCognition can be used to segment cells and organelles, describe cellular morphology, annotate and classify phenotypes, and for tracking. It was initially developed for quantitative phenotypic profiling of mitosis and can also be used to analyse other dynamic processes.
Type of tool: Image analysis software
Resource Created By: Gerlich & Langer
Is this tool open source?: Yes
You may also be interested in
Open source laser engine
Parts list, CAD files & detailed descriptions
Ries Lab, EMBL
SynapseNet: Deep Learning for Automatic Synapse Reconstruction
automatic synapse reconstruction and analysis in EM
Sarah Muth, Frederieke Moschref, Luca Freckmann, Sophia Mutschall, Ines Hojas-Garcia-Plaza, Julius N. Bahr, Arsen Petrovic, Thanh Thao Do, Valentin Schwarze, Anwai Archit, Kirsten Weyand, Susann Michanski, Lydia Maus, Cordelia Imig, Nils Brose, Carolin Wichmann, Ruben Fernandez-Busnadiego, Tobias Moser, Silvio O. Rizzoli, Benjamin H. Cooper, Constantin Pape
QuPath
software for whole slide image analysis
Pete Bankhead and Jose Fernandez