Advertisement

CSBDeep

Posted on 4 December 2019

An open-source, deep-learning toolkit for microscopists focused on image restoration and segmentation. The website includes examples of the image restoration and segmentation capabilities and outlines the training data requirements. The tools available within CSBDeep include CARE, DenoiSeg, Noise2Void and StarDist.

Type of tool: Image analysis software

Website

Resource Created By: Weigert M et al

Is this tool open source?: Yes

You may also be interested in

symbol for thumbnail

PYthon Microscopy Environment (PYME)

Image acquisition & analysis

David Baddeley

symbol for thumbnail

Image Data Resource (IDR)

Online, public data repository

University of Dundee & Open Microscopy Environment

symbol for thumbnail

SynapseNet: Deep Learning for Automatic Synapse Reconstruction

automatic synapse reconstruction and analysis in EM

Sarah Muth, Frederieke Moschref, Luca Freckmann, Sophia Mutschall, Ines Hojas-Garcia-Plaza, Julius N. Bahr, Arsen Petrovic, Thanh Thao Do, Valentin Schwarze, Anwai Archit, Kirsten Weyand, Susann Michanski, Lydia Maus, Cordelia Imig, Nils Brose, Carolin Wichmann, Ruben Fernandez-Busnadiego, Tobias Moser, Silvio O. Rizzoli, Benjamin H. Cooper, Constantin Pape