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DeepImageJ: Deep learning in bioimage analysis for dummies

Posted by Estibaliz Gómez-de-Mariscal, on 2 December 2021

Written by Estibaliz Gómez-de-Mariscal, Cristina de-la-Torre-Gutiérrez, Arrate Muñoz-Barrutia, and Daniel Sage Do you invest significant time looking for tools to analyze your microscopy images? Probably you have already heard about the extraordinary capabilities of deep learning (DL) to reveal complex visual structures in images. If you are a biologist practicing daily ImageJ, you may look

The story behind ZeroCostDL4Mic, or How to get started with using Deep Learning for your microscopy data

Posted by Romain Laine, on 18 January 2021

We all hear again and again about Deep Learning (DL), how great it is, how it’s going to revolutionise science, engineering, medicine and work. But where and how is this all happening? If you wonder how you could get started on thinking, let alone using DL on your microscopy data, look no further, we have

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Microscopy-related articles from our journals

Toggle-Untoggle – a cell segmentation tool with an interactive user verification interface J Cell Sci 2025 138: jcs264154
The ratio of Wnt signaling activity to Sox2 transcription factor levels predicts neuromesodermal fate potential Development 2025 152: dev204661
The short isoform of Tango1 is dispensable for zebrafish survival but is required for skeletal patterning and integrity Biology Open 2025 14: bio062117

Microscopy-related preprint highlights

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