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Imaris - 3D image visualization and analysis course report

Posted by Quentin LEBEL, on 23 January 2026

I attended a training session at the Bordeaux Faculty to learn how to use IMARIS, a software designed for viewing, measuring, and analyzing 3D microscopy images. The training, organized by the Bordeaux Imaging Center (BIC), was structured to first provide an overview of the software’s broad capabilities and then dig into more specific applications tailored

Community collective: viewing z-stacks in 3D

Posted by FocalPlane, on 14 June 2023

Have you ever sat at your computer and wondered if you have the best representation of your imaging data? Would another software give you better (or different) results? Joy Franco (@engineering_joy) asked the science community on Twitter for their software recommendations for viewing confocal Z-stacks in 3D. Joy’s top request was being able to finely

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Microscopy-related articles from our journals

Toggle-Untoggle – a cell segmentation tool with an interactive user verification interface J Cell Sci 2025 138: jcs264154
The ratio of Wnt signaling activity to Sox2 transcription factor levels predicts neuromesodermal fate potential Development 2025 152: dev204661
The short isoform of Tango1 is dispensable for zebrafish survival but is required for skeletal patterning and integrity Biology Open 2025 14: bio062117

Microscopy-related preprint highlights

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