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Structural Repetition Detector (SReD): quantitative mapping of molecular complexes through microscopy

Posted by , on 23 September 2024

Unbiased, multi-dimensional, multi-scale and GPU-accelerated analysis of structural patterns across all microscopy modalities From biomolecules to larger assemblies and cellular architectures, molecular structures govern biological processes. Identifying these repetitive patterns is essential to understand their functions and the underlying biological mechanisms. While microscopy offers molecular-level detail, manually detecting structural motifs is labor-intensive, susceptible to bias,
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Image Analysis course with Fiji/ImageJ

Posted by , on 18 September 2024

Online course introducing you to the basics of image analysis, including automatic segmentation, colocalisation, denoising, 3D, etc.
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Image Analysis course with Fiji/ImageJ

Posted by , on 20 March 2024

An online course introducing you to the basics of image analysis, including automatic segmentation, colocalisation, denoising, 3D, etc. Two sessions, happening in May and June 2024.
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“Image analysis workshop” in Dublin (Ireland) - 24-25/04/2024

Posted by , on 14 March 2024

This two-day workshop on April 24th-25th 2024 is designed to empower microscopists and researchers with the necessary skills and tools to confidently analyse their data. Under the instruction of experienced core facility staff from the Francis Crick Institute and King’s College London, participants will be introduced to open-source tools such as FIJI and napari, and
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Image Analysis course with Fiji/ImageJ

Posted by , on 20 February 2024

An online course introducing you to the basics of image analysis, including automatic segmentation, colocalisation, denoising, 3D, etc.
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Image Analysis course with Fiji/ImageJ

Posted by , on 3 December 2023

We would like to invite you to an online course introducing you to the basics of image analysis, including automatic segmentation, colocalisation, denoising, 3D, etc. This course will start on February 5th, 2024. Sign-up and additional details here. What You’ll Learn This course consists of five 2.5-hour live interactive online sessions, where you’ll dive into
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TrackMate-Oneat: Auto Track correction using deep learning networks

Posted by , on 4 July 2022

During the tracking of motile cells, solving the problem of linking objects between two consecutive timepoints becomes even more complicated, if the cells divide or undergo cell death. In the terms of trajectories, this means the addition of trajectory branches and terminations. However, dividing and dying cells are characteristic in their shape, and leveraging this
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A career path to bioimage analysis

Posted by , on 9 December 2020

I am currently working in Heidelberg, Germany, finishing my PhD thesis between the medical university of Heidelberg and the microscopy company ACQUIFER. My research project is dedicated to the development of user-oriented software solutions (Fiji plugins, KNIME workflows…) to facilitate the handling and analysis of large microscopy datasets of 2D images. The project is motivated
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Bioimage Analysis in FIJI - Resource List

Posted by , on 14 September 2020

If you are on this site, you might be aware of some of the open source image processing and analysis tools are available to you. The toolbox in this space is rapidly expanding. But that doesn’t always mean it’s easy to navigate – it can actually be quite daunting. Luckily the bio-imaging community is friendly
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