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Euro-BioImaging User Forum: Image Data

Posted by Marianna Poli, on 5 March 2024

Join us for the Euro-BioImaging User Forum on Image Data on Tuesday, March 26th, 2024, from 14:00-17:00 CET.

An interview on the Traversing European Coastlines (TREC) project with Yannick Schwab

Posted by Helen Zenner, on 5 March 2024

Traversing European Coastlines (TREC) is a flagship project in the planetary biology theme from European Molecular Biology Laboratory (EMBL). A consortium of several research organisations under the lead of EMBL has embarked on an expedition to sample the biodiversity in the coastlines of Europe in 2023 and 2024. We caught up with Yannick Schwab, Team

Unlock Your Microscopy Teaching Potential

Posted by Andrés Olivera, on 4 March 2024

Join us for the Latin America Light Microscopy, Train-the-Trainer course in Buenos Aires 🇦🇷 from June 3-7! It is not a microscopy course but a course to train imaging scientists how to run their courses and user training. The course will be taught in a way to provide participants with suggested content for each topic, annotated lecture slides,

Featured image with Thibault Dhellemmes and Jérémie Teillon

Posted by FocalPlane, on 1 March 2024

Our featured image shows the full morphology of Relaxin-3 neurons in an entire adult mouse brain. To observe the full depth of this brain, it was made transparent by applying an optical clearing technique called Adipoclear. The sample was observed on an Ultramicroscope II light sheet microscope and is a maximum intensity projection over the

An interview with Estibaliz Gómez de Mariscal

Posted by Helen Zenner, on 27 February 2024

At the end of 2023, DL4MicEverywhere was released. The platform aims to make deep learning methods in bioimage analysis more accessible and more reproducible. We caught up with Estibaliz Gómez de Mariscal (Esti), one of the co-leads of the project, to find out more about the platform, and to chat about Esti’s career so far

Will your algorithm be the best for this new image data challenge?

Posted by France-BioImaging, on 26 February 2024

In order to answer image data analysis demands, France-BioImaging is launching its first data machine learning competition: welcome to the Light My Cells challenge! The Light My Cells challenge aims at contributing to the development of new image-to-image ‘deep-label’ methods in the fields of biology and microscopy. Basically, the goal is to predict the best-focused output-images of several organelles

Microscopy preprints – new tools and techniques in imaging

Posted by FocalPlane, on 23 February 2024

Here is a curated selection of preprints posted recently on new tools and techniques in imaging. Let us know if we are missing any preprints that are on your reading list.

New FocalPlane features... webinar series

Posted by FocalPlane, on 22 February 2024

We are excited to announce a new series of FocalPlane features… webinars. Our first webinar, on 7 March at 15:00 GMT (10:00 PET) focusses on outreach projects using microscopy, with talks from Paola Moreno-Roman, Alexander Strachan and Martin Jones.

Image Analysis course with Fiji/ImageJ

Posted by Lior Pytowski, on 20 February 2024

An online course introducing you to the basics of image analysis, including automatic segmentation, colocalisation, denoising, 3D, etc.

Imaging with IMAG’IC, the photonic imaging core-facility of Institut Cochin, Paris, France.

Posted by FocalPlane, on 20 February 2024

In our ‘Imaging with…’ blog post, we meet the staff of IMAG’IC, the photonic imaging core-facility of Institut Cochin, Paris, France.

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Microscopy-related articles from our journals

HCR spectral imaging: 10-plex, quantitative, high-resolution RNA and protein imaging in highly autofluorescent samples Development 2024 151: dev202307
filoVision – using deep learning and tip markers to automate filopodia analysis J Cell Sci 2024 137: jcs261274
C omputational tools for quantifying actin filament numbers, lengths, and bundling Biology Open 2024 13: bio.060267

Microscopy-related preprint highlights

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