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An interview with Estibaliz Gómez de Mariscal

Posted by , on 27 February 2024

At the end of 2023, DL4MicEverywhere was released. The platform aims to make deep learning methods in bioimage analysis more accessible and more reproducible. We caught up with Estibaliz Gómez de Mariscal (Esti), one of the co-leads of the project, to find out more about the platform, and to chat about Esti’s career so far

Will your algorithm be the best for this new image data challenge?

Posted by , on 26 February 2024

In order to answer image data analysis demands, France-BioImaging is launching its first data machine learning competition: welcome to the Light My Cells challenge! The Light My Cells challenge aims at contributing to the development of new image-to-image ‘deep-label’ methods in the fields of biology and microscopy. Basically, the goal is to predict the best-focused output-images of several organelles

Microscopy preprints – new tools and techniques in imaging

Posted by , on 23 February 2024

Here is a curated selection of preprints posted recently on new tools and techniques in imaging. Let us know if we are missing any preprints that are on your reading list.

New FocalPlane features... webinar series

Posted by , on 22 February 2024

We are excited to announce a new series of FocalPlane features… webinars. Our first webinar, on 7 March at 15:00 GMT (10:00 PET) focusses on outreach projects using microscopy, with talks from Paola Moreno-Roman, Alexander Strachan and Martin Jones.

Image Analysis course with Fiji/ImageJ

Posted by , on 20 February 2024

An online course introducing you to the basics of image analysis, including automatic segmentation, colocalisation, denoising, 3D, etc.

Imaging with IMAG’IC, the photonic imaging core-facility of Institut Cochin, Paris, France.

Posted by , on 20 February 2024

In our ‘Imaging with…’ blog post, we meet the staff of IMAG’IC, the photonic imaging core-facility of Institut Cochin, Paris, France.

Featured image with Rossana Melo

Posted by , on 16 February 2024

Our featured image, acquired by Rossana Melo, shows a human eosinophil isolated from the peripheral blood using a negative immunomagnetic selection method and prepared for transmission electron microscopy (TEM). The image was acquired with a Tecnai G2 Spirit Bio Twin ThermoFisher Scientific (former FEI) electron microscope.

Microscopy preprints – bioimage analysis tools

Posted by , on 9 February 2024

Here is a curated selection of preprints published recently. In this post, we focus specifically on new tools for bioimage analysis and data management.

FocalPlane playlist: Rita Strack

Posted by , on 7 February 2024

I was really excited to be invited to create a blog post with my very own “microscopy mix tape” on the FocalPlane blog. I am a huge fan of the work The Company of Biologists does, and I am a consummate consumer of all things FocalPlane as well. Just by way of quick introduction, I

Need Deep Learning support for your image analysis project?

Posted by , on 5 February 2024

The Second AI4Life Open Call, tailored to offer Deep Learning support to life scientists dealing with image analysis challenges, is open.