News digest

Here is a selection of interesting news, publications and discussions related to microscopy that happened in the last two weeks.

Thank you to our ‘FocalPlane reporter’ Martin Jones who helped us create this list.

Twitter

Microscopes and imaging tools:

• CompassLSM https://twitter.com/MesoSpim/…

• Methods Primer on force spectroscopy of single cells https://twitter.com/AnkitaChem/…

Bioimage analysis:

• Review on Deep Learning for Denoising of microscopy images https://twitter.com/LaineBioImaging/...

• The costs of deep-learning and how they might shape future developments https://twitter.com/jytinevez/...

• The ever-growing reach of Napari now includes PDB files https://twitter.com/brisvag/...

• Integrating Deep Learning with Trackmate for improved performance https://twitter.com/JwPylvanainen/...

• ImgLib2-Imaris-Bridge to link Fiji and Imaris analysis workflows https://twitter.com/pietzscht/…

• Lectures and material from “Data science in cell imaging” course at Ben Gurion University https://twitter.com/AssafZaritsky/...

• 3hr crash-course in quantitative bioimage analysis from Robert Haase – slides available online https://twitter.com/haesleinhuepf/...

• DeepImageJ published in Nature Methods https://twitter.com/ArrateMunoz/…

• New version of Weka released https://twitter.com/IgnacioArganda/…

News and interesting reads:

• A projectome of the bumblebee central complex, unifying nomenclature across multiple model organisms https://twitter.com/albertcardona/...

• Interesting thread on unraveling the role of clathrin in neurons https://twitter.com/Roy_Lab_Thinks/…

• cryo-EM reveals host tRNAs in virion’s capsid https://twitter.com/NatureComms/…

• Great tutorial by Pablo Carravilla on using exchangeable dyes for STED imaging of membrane dynamics https://twitter.com/carravilla_p/…

• Ethics in image data analysis https://twitter.com/NadiaHalidi/…

• The importance of choosing colours correctly https://twitter.com/iamscicomm/…

Scientists at work

• Building a rainbow https://twitter.com/MIC_KCL/…

• Cell cookies! https://twitter.com/rachaelzmurray…

Movie time

• The Nanoscale trailer is out https://twitter.com/3DVAL/…

• Colourful dividing cells https://twitter.com/TyskaLabActual/…

• Axon trafficking in real time https://twitter.com/christlet/…

• Axon branching https://twitter.com/AlainChedotal/…

We hope you find this post interesting. Please let us know if you think we should include other topics or discussion platforms.

If you would like to contribute to these news digest posts, contact us or join our Slack workspace.

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