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behind DeXtrusion: an automated pipeline to detect epithelial cell extrusion through machine learning

Posted by Alexis Villars, on 6 October 2023

The problem In animals, epithelial tissue covers most of our organs. In order to create the very intricate and complex shapes of these organs, these tissues are drastically remodelled during embryogenesis through growth and shape changes. Once they achieve these final shapes, they maintain their cell number in a dynamic equilibrium. Both of these mechanisms,

Microscopy preprints – applications in biology

Posted by FocalPlane, on 22 September 2023

In this post, we share preprints that use microscopy tools to answer questions in biology.

The FocalPlane Network: connecting the microscopy community

Posted by FocalPlane, on 20 September 2023

The FocalPlane Network is an international directory of researchers with expertise in microscopy. The goal of the Network is to facilitate promotion and networking, as well as assisting those seeking conference speakers, committee members, reviewers or collaborators. Membership is open to researchers in the microscopy community from all career stages, geographical locations or areas of

Microscopy preprints – new tools and techniques in imaging

Posted by FocalPlane, on 8 September 2023

Here is a curated selection of preprints posted recently on new tools and techniques in imaging. Let us know if we are missing any preprints that are on your reading list.

Microscopy preprints – bioimage analysis tools

Posted by FocalPlane, on 25 August 2023

Here is a curated selection of preprints published recently. In this post, we focus specifically on new tools for bioimage analysis.

Microscopy preprints – applications in cell and developmental biology

Posted by FocalPlane, on 11 August 2023

Here is a curated selection of preprints published recently. In this post, we share preprints that use microscopy tools in cell biology and developmental biology.

Microscopy preprints – new tools and techniques in imaging

Posted by FocalPlane, on 28 July 2023

Here is a curated selection of preprints posted recently on new tools and techniques in imaging. Let us know if we are missing any preprints that are on your reading list.

Microscopy preprints – bioimage analysis tools

Posted by FocalPlane, on 14 July 2023

Here is a curated selection of preprints published recently. In this post, we focus specifically on new bioimage analysis tools, including a number of preprints on generative AI.

FocalPlane image competition - vote for your favourite

Posted by FocalPlane, on 4 July 2023

Thanks to everyone who entered our 2023 image competition, we were delighted to receive so many wonderful entries. We have shortlisted 10 images for our public vote. You can vote using the poll at the bottom of this page and the image with the most votes will be featured on the cover of Journal of

Microscopy preprints – applications in cell and developmental biology

Posted by FocalPlane, on 30 June 2023

Here is a curated selection of preprints published recently. In this post, we share preprints that use microscopy tools in cell biology and developmental biology.

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Microscopy-related articles from our journals

HCR spectral imaging: 10-plex, quantitative, high-resolution RNA and protein imaging in highly autofluorescent samples Development 2024 151: dev202307
filoVision – using deep learning and tip markers to automate filopodia analysis J Cell Sci 2024 137: jcs261274
C omputational tools for quantifying actin filament numbers, lengths, and bundling Biology Open 2024 13: bio.060267

Microscopy-related preprint highlights

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