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FocalPlane features... reproducibility in imaging - recordings

Posted by , on 8 November 2024

For the October edition of FocalPlane features…, we hosted a webinar on reproducibility in imaging with talks from Helena Jambor and Kota Miura. Helena told us, ‘How not to lie with image data’ and focussed on data presentation. Helena also touched on the importance of accessibility when presenting data and much of the discussion following
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FocalPlane features... reproducibility in imaging

Posted by , on 23 September 2024

Our next FocalPlane features… webinar is on reproducibility with talks from Helena Jambor and Kota Miura. Helena's talk will cover the community checklists for publishing images, which were developed by QUAREP-LiMi and published at the end of 2023, as she tells us 'How not to lie with image data'. Kota's talk will focus on bioimage analysis and
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Image checklists v1.0 from QUAREP-LiMi

Posted by , on 16 March 2023

QUAREP-LiMi (Quality Assessment and Reproducibility for Instruments and Images in Light Microscopy) is a community group of light microscopists, science communicators, business representatives, vendors and application specialists aiming to improve both quality assessment and quality control in microscopy. QUAREP-LiMi is organised into (currently) 13 working groups, focusing on areas such as illumination power, lateral and
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Managing Scientific Python environments using Conda, Mamba and friends

Posted by , on 8 December 2022

TL:DR: This blog post gives short instructions and explanations to demystify how some scientific Python programmers, including myself, organize their coding environment for the sake of reproducibility of science. We will see what conda and mamba are, what they are good for, and how to use them properly. We will also take a short excursion
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