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Analyzing calcium imaging data using Python

Posted by , on 27 October 2023

Andrey AndreevCalifornia Institute of Technology, David Prober labaandreev@caltech.edu Calcium imaging allows tracking neural activity in time with single-cell resolution. There are many questions you might be interested in answering using this technique: which cells are tuned to the stimuli? is there periodic activity present in the data? which cells act together? how complex is the activity
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First steps for presentation and analysis of calcium imaging data

Posted by , on 6 September 2022

Andrey Andreev, Desiderio AscencioCalifornia Institute of Technology, David Prober labaandreev@caltech.edu Calcium imaging is a widely used tool in neuroscience, and our community now has access to multiple computational tools to process and analyze these data. However, a significant portion of work with imaging data relies on much simpler approaches than offered in these software packages.
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A biologist’s checklist for calcium imaging and optogenetic analysis

Posted by , on 12 April 2021

Technological advancement constantly makes these methods more accessible, however, there are a number of understated complexities involved with these types of imaging-based experiments
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