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TrackMate-Oneat: Auto Track correction using deep learning networks

Posted by varun kapoor, on 4 July 2022

During the tracking of motile cells, solving the problem of linking objects between two consecutive timepoints becomes even more complicated, if the cells divide or undergo cell death. In the terms of trajectories, this means the addition of trajectory branches and terminations. However, dividing and dying cells are characteristic in their shape, and leveraging this

Euro-BioImaging Bio-Hub - Scientific Project Manager - AI4LIFE

Posted by Johanna Bischof, on 4 July 2022

The Euro-BioImaging Bio-Hub hosted by European Molecular Biology Laboratory (EMBL) is looking for a highly motivated Scientific Project Manager to support the operation of the newly funded EU project, AI4LIFE, which aims at making pre-trained deep learning models and methods for microscopy imaging FAIR for life science researchers. If you have foundational scientific knowledge about

FocalPlane News Digest

Posted by FocalPlane, on 29 June 2022

Talks, training and workshops Don’t miss our FocalPlane features… webinar on quantitative phase imaging and its cell biological applications. If you haven’t already, book your place https://focalplane.biologists.com/focalplane-features/ Have you submitted an abstract for the Abercrombie Meeting yet? Fear not – the submission deadline has been extended: https://www.rms.org.uk/rms-event-calendar/2022-events/abercrombie-meeting-2022/abstracts.html The Microscopy and Microanalysis (M&M) Meeting is taking

Imaging Specialist - University of Warwick

Posted by Claire Mitchell, on 28 June 2022

Permanent Position, Full time – 36.5 hours per week The postholder will provide expert-level hands-on technical and user support for optical microscopy. The appointee will need to combine enthusiasm and careful attention to detail with adaptability. The post would suit an individual with a background in physics who wants to apply their skills to advance

Euro-BioImaging Bio-Hub - EU Project Manager

Posted by Johanna Bischof, on 27 June 2022

JOB VACANCY: Euro-BioImaging Bio-Hub – EU Project Manager (EMBL) The Euro-BioImaging Bio-Hub hosted by European Molecular Biology Laboratory (EMBL) is seeking a highly motivated EU Project Manager to support the team in operations, administration and management of the Bio-Hub’s contribution in three Horizon Europe projects. These projects range from eRImote, to develop remote and digital

EMBL Imaging Centre: Enabling imaging across scales

Posted by Virginia Pierini, on 17 June 2022

With its first symposium, the EMBL Imaging Centre introduced its services, aims, and missions to the scientific community, celebrated advancements in imaging, and provided a sneak-peek into the cutting-edge technologies and advanced training it will make accessible to researchers all over the world.

The winner of the ELMI/FocalPlane image contest is...

Posted by FocalPlane, on 15 June 2022

We hope that you enjoyed the over 60 stunning images of the ELMI/FocalPlane image contest as much as we did. Many thanks to everyone who voted (we are sure it was not easy to select just one favourite image!). In addition to the public vote, the organisers of the ELMI2022 conference also set up an

Light Microscopy Imaging Specialist

Posted by Chloe van Oostende-Triplet, on 9 June 2022

We are seeking a highly skilled imaging specialist for the Cell Biology and Imaging Analysis (CBIA) core facility at the Faculty of Medicine, University of Ottawa, Canada. Our facility provides access to advanced imaging techniques such as live, high- and super- resolution imaging as well as high-throughput microscopy. The CBIA core offers support from sample

Vote for your favourite image in the ELMI/FocalPlane microscopy image contest!

Posted by FocalPlane, on 30 May 2022

Voting for the image contest that we co-organised with the #ELMI2022 conference team is now open. We were thrilled to receive over 60 entries featuring a range of microscopy techniques, including widefield, confocal, spinning disk, super-resolution, and electron microscopy. VOTE HERE! Big thanks to all our contestants for their contributions and we wish them good

Explorative image data science with napari

Posted by Robert Haase, on 23 May 2022

When analysing microscopy image data of biological systems, a major bottleneck is to identify image-based features that describe the phenotype we observe. For example when characterising phenotypes of nuclei in 2D images, often questions come up such as “Shall we use circularity, solidity, extend, elongation, aspect radio, roundness or Feret’s diameter to describe the shape

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Microscopy-related articles from our journals

HCR spectral imaging: 10-plex, quantitative, high-resolution RNA and protein imaging in highly autofluorescent samples Development 2024 151: dev202307
filoVision – using deep learning and tip markers to automate filopodia analysis J Cell Sci 2024 137: jcs261274
C omputational tools for quantifying actin filament numbers, lengths, and bundling Biology Open 2024 13: bio.060267

Microscopy-related preprint highlights

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