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Annotating Images in Cellpose

Posted by , on 5 June 2025

In this blog post, I’ll show you how to manually annotate cells in 2D and 3D images using the Cellpose Graphical User Interface (GUI). Manual annotation is a key step in many bioimage analysis workflows. It allows you to create labeled data that can serve as a reference for evaluating segmentation quality – or even
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Microscopy preprints - bioimage analysis

Posted by , on 30 May 2025

Here is a curated selection of preprints published recently (up until 22 May). In this post, we focus specifically on bioimage analysis and data management.
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Workshop report: UC Berkeley’s Advanced Imaging Methods Workshop

Posted by , on 29 May 2025

I attended UC Berkeley’s Advanced Imaging Methods Workshop with goals of becoming more familiar with a) high resolution imaging methods and hardware I did not have access to at my home institution and b) image processing and analysis algorithms, especially those based on machine learning/AI. The workshop provided ample opportunity to fulfill both of these
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Workshop report: France BioImaging - Advanced Training on Light-Sheet Microscopy

Posted by , on 22 May 2025

From November 4th to 7th, 2024, I had the privilege to attend the Advanced Training on Light-Sheet Microscopy‘s Principles and Applications to Neuroscience and 3D Cell Culture at France BioImaging in Bordeaux. This comprehensive training, rich in both theoretical and practical knowledge, provided an exceptional platform for learning and engaging with experts in the field.
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Microscopy preprints - bioimage analysis

Posted by , on 18 April 2025

Here is a curated selection of preprints published recently. In this post, we focus specifically on bioimage analysis and data management.
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Microscopy preprints - bioimage analysis

Posted by , on 7 March 2025

Here is a curated selection of preprints published recently. In this post, we focus specifically on bioimage analysis and data management.
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Bringing the past into the future with JCS and FocalPlane

Posted by , on 19 February 2025

As The Company of Biologists celebrates its 100-year anniversary, Saanjbati Adhikari and Seema Grewal look back over the history and evolution of Journal of Cell Science – from its early days as the Quarterly Journal of Microscopical Science (QJMS) to the publication we are familiar with today.  You can read about the past, present and
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Featured image with Ellen C. O'Shaughnessy

Posted by , on 31 January 2025

Our featured image shows the locations of exocytic hotspots in a developing cortical neuron.
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Microscopy preprints - bioimage analysis

Posted by , on 24 January 2025

Here is a curated selection of preprints published recently. In this post, we focus specifically on bioimage analysis and data management.
Read more

Microscopy preprints - bioimage analysis

Posted by , on 29 November 2024

Here is a curated selection of preprints published recently. In this post, we focus specifically on bioimage analysis and data management.
Read more

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