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Microscopy preprints: bioimage analysis

Posted by , on 29 December 2025

Here is a curated selection of preprints published (or updated) recently. In this post we focus specifically on bioimage analysis and data management.
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The Company of Biologist Workshop - Democratising Microscopy in Latin America: Imaging Across Scales and Regions

Posted by , on 22 December 2025

In October, I was lucky enough to attend The Company of Biologist Workshop – Democratising Microscopy in Latin America: Imaging Across Scales and Regions. The organisers, Constadina Arvanitis, Mario Del Rosario, Helena De la Torre, Mariana De Niz, Maria Fernanda Latorre Barragán and Licyel Lenny Paulas Condori, put together an incredible programme featuring top researchers
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Imaging spotlight: u-Segment3D

Posted by , on 11 December 2025

In this paper highlight, we learn about u-Segment3D, a software framework developed by Felix Zhou and Gaudenz Danuser and colleagues.
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GloBIAS – The Global BioImage Analysts’ Society

Posted by , on 20 November 2025

Over the past two years, GloBIAS has evolved from a visionary concept into a thriving and steadily growing international network.
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Microscopy preprints – bioimage analysis

Posted by , on 14 November 2025

Here is a curated selection of preprints published recently. In this post, we focus specifically on bioimage analysis and data management.
Read more

Microscopy preprints - bioimage analysis

Posted by , on 3 October 2025

Here is a curated selection of preprints published recently. In this post, we focus specifically on bioimage analysis and data management.
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Microscopy preprints - bioimage analysis

Posted by , on 22 August 2025

Here is a curated selection of preprints published recently. In this post, we focus specifically on bioimage analysis and data management.
Read more

From Click to Code: Reproducibility in Bio-image Analysis

Posted by , on 5 August 2025

Reproducibility is at the heart of good science. But when it comes to bio-image analysis, it can feel difficult to achieve. Complex datasets, shifting software environments, and countless manual tweaks often make it hard to retrace your own steps and share workflows with others. An aim should be to package the entire analysis, like code, data
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Microscopy preprints - bioimage analysis

Posted by , on 11 July 2025

Here is a curated selection of preprints published recently. In this post, we focus specifically on bioimage analysis and data management.
Read more

Annotating Images in Cellpose

Posted by , on 5 June 2025

In this blog post, I’ll show you how to manually annotate cells in 2D and 3D images using the Cellpose Graphical User Interface (GUI). Manual annotation is a key step in many bioimage analysis workflows. It allows you to create labeled data that can serve as a reference for evaluating segmentation quality – or even
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