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Microscopy preprints: bioimage analysis

Posted by , on 20 March 2026

Here is a curated selection of preprints published (or updated) recently. In this post we focus specifically on bioimage analysis and data management.
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Workshop report: Analytical and Quantitative Light Microscopy (AQLM) Course

Posted by , on 17 March 2026

Aliyah Tate shares her workshop report from the Analytical and Quantitative Light Microscopy (AQLM) Course at Woods Hole. Aliyah’s attendance was supported with a JCS-FocalPlane Training Grant.
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JCS snapshot: Redefining colocalization analysis with a novel phasor mixing coefficient

Posted by , on 6 March 2026

In our latest JCS snapshot we hear from Owen Puls, who together with Teng-Leong Chew and team define a new strategy for quantifying biological association that leverages multispectral imaging and phasor analysis, termed the phasor mixing coefficient (PMC). In this snapshot, Owen takes us through the key findings from their research.
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Workshop report: CSHL Quantitative Imaging (QI): From Acquisition to Analysis

Posted by , on 4 March 2026

Estefania Sanchez-Vasquez shares her workshop report from the CSHL course on Quantitative Imaging (QI): From Acquisition to Analysis. Estefania’s attendance was supported by a JCS-FocalPlane Training Grant.
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Featured image with Ioannis Theodorou

Posted by , on 27 February 2026

Our featured image, from Ioannis Theodorou, was acquired with Leica Stellaris 8 and the TauSeparation mode. It is the TauContrast channel and it shows the average fluorophore lifetime per pixel. The image was processed on Las X and inkscape. The region shown comes from compressed wood tissue.
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Workshop report: EMBO Course on Image Processing in Cryo-EM

Posted by , on 9 February 2026

Freya Cardozo shares her workshop report from the EMBO course on Imaging Processing in Cryo-EM. Freya's attendance was supported with a JCS-FocalPlane Training Grant.
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Microscopy preprints: bioimage analysis

Posted by , on 6 February 2026

Here is a curated selection of preprints published (or updated) recently. In this post we focus specifically on bioimage analysis and data management.
Read more

Imaging spotlight: ShapeSpaceExplorer

Posted by , on 5 February 2026

In this paper highlight, we learn about ShapeSpaceExplorer, a tool for measuring cell shape of migrating cells, developed by Samuel Jefferyes, Anne Straube and colleagues.
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2026 Boston Bioimage Analysis Course (BoBiAC)

Posted by , on 3 February 2026

📣  After a successful 2025 edition, we’re excited to share we are now accepting applications for the 💻  2026 Boston Bioimage Analysis Course (BoBiAC)📊! Join us at Harvard Medical School this July for a 6-day intensive hands-on course where you will learn both Python and bioimage analysis, starting from the basics and applying each concept directly to fluorescence microscopy images. If you answered yes
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JCS snapshot: Tracking coordinated cellular dynamics in time-lapse microscopy with ARCOS.px

Posted by , on 29 January 2026

In our latest JCS snapshot we hear from Maciej Dobrzyński, who, together with Benjamin Grädel and colleagues, developed ARCOS.px, a software tool to automatically identify and track coordinated dynamic cellular events in time-lapse microscopy movies.
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