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Microscopy preprints - bioimage analysis

Posted by FocalPlane, on 29 November 2024

Here is a curated selection of preprints published recently. In this post, we focus specifically on bioimage analysis and data management.

behind DeXtrusion: an automated pipeline to detect epithelial cell extrusion through machine learning

Posted by Alexis Villars, on 6 October 2023

The problem In animals, epithelial tissue covers most of our organs. In order to create the very intricate and complex shapes of these organs, these tissues are drastically remodelled during embryogenesis through growth and shape changes. Once they achieve these final shapes, they maintain their cell number in a dynamic equilibrium. Both of these mechanisms,

Image Analyst at Harvard Medical School

Posted by Simon Nørrelykke, on 27 February 2023

We are looking for two or more smart, skilled, and enthusiastic bioimage analysts, to join us as soon as possible. Harvard Medical School (HMS) is a world leader in biological and biomedical imaging, with an outstanding community of researchers using cutting-edge microscopy to advance the field. The Image Analysis Collaboratory (IAC) is dedicated to training

FocalPlane features... Quantitative Phase Imaging

Posted by FocalPlane, on 6 July 2022

In case you missed ‘FocalPlane features…’ last month, here is the recording of the webinar given by Zuzana Nováková, Patrick McCall and Jan Balvan on Thursday 30 June 2022.

FocalPlane features... Machine Learning

Posted by FocalPlane, on 3 March 2022

In case you missed ‘FocalPlane features…’ last month, here is the recording of the webinar given by Ricardo Henriques (Instituto Gulbenkian de Ciência), Estibaliz Gómez de Mariscal (Instituto Gulbenkian de Ciência) and Martin Weigert (EPFL) on Wednesday 16 February 2022.

Postdoctoral Researcher Optical and Computational Biophysics, Instituto Gulbenkian de Ciência, Portugal

Posted by Ricardo Henriques, on 24 February 2022

The Instituto Gulbenkian de Ciência – IGC is inviting applications for a postdoctoral researcher to join the Henriques (Optical Cell Biology) laboratory as part of a highly-collaborative and interdisciplinary team developing novel superresolution microscopy, machine learning and automation technologies and their application to tackle cellular infection. The IGC is an international institute located in a

Janelia+EMBL BioImaging Seminar Series: How We Started a Successful Seminar Series during the Pandemic

Posted by Ulrike Boehm, on 25 January 2022

How we started a global BioImaging seminar series in the middle of a global pandemic...

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Microscopy-related articles from our journals

HCR spectral imaging: 10-plex, quantitative, high-resolution RNA and protein imaging in highly autofluorescent samples Development 2024 151: dev202307
filoVision – using deep learning and tip markers to automate filopodia analysis J Cell Sci 2024 137: jcs261274
C omputational tools for quantifying actin filament numbers, lengths, and bundling Biology Open 2024 13: bio.060267

Microscopy-related preprint highlights

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