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PhD Engineering Scholarship: Laser Technologies in Medical Applications

Posted by Rodrigo Aviles, on 26 February 2024

The university of Sussex is offering a a 3.5 year Engineering PhD scholarship based in the High Precision and Optical Metrology research lab led by Dr Rodrigo Aviles-Espinosa. What you getYou will receive a tax-free stipend at a standard rate of £19,237 per year and your fees will be waived (at the UK, EU, or

Crick Bioimage Analysis Symposium 2023 - a Review

Posted by vanesssadao, on 22 December 2023

(By Vanessa Dao, Hradini Konthalapalli, Olatz Niembro Vivanco, Karishma Valand) The Crick Bioimage Analysis Symposium had its first in-person meeting in 2022. This year, #CBIAS2023 gathered around 200 people on site and 80 virtually. It has been an exciting two days of bringing biomedical researchers and their questions together with image analysis and their techniques.

All things unequal – live microscopy reveals asymmetric RNA localization in the early mammalian embryo

Posted by Jennifer Zenker, on 4 September 2023

Authors: Jennifer Zenker1,*, Julian Heng2 1Australian Regenerative Medicine Institute (ARMI), Faculty of Medicine, Nursing and Health Sciences, Monash University, Clayton, Australia 2Remotely Consulting, Perth, Australia *Corresponding author Non-mammalian systems have been invaluable for us to decipher evolutionarily-conserved processes, orthologous molecules and cellular phenomena underlying early embryo development. One fundamental discovery from the work on non-mammalian

Tracking in napari

Posted by Mara Lampert, on 1 June 2023

In this blog post we are exploring cell tracking in napari. Two important processes in normal tissue development and disease are cell migration and proliferation. To gain a better understanding on these processes, tracking in time-lapse datasets is needed. By measuring track properties, like velocity and the total travelled distance, spatio-temporal relationships can be studied.

Director of Cambridge Advanced Imaging Centre and SBS Microscopy Network at University of Cambridge

Posted by Antonina Kruppa, on 31 May 2023

https://www.jobs.cam.ac.uk/job/40627/ Closing Date: 30 June 2023.

Feature extraction in napari

Posted by Mara Lampert, on 3 May 2023

This blog post revolves around extracting and selecting features from segmented images. We will define the terms feature extraction and selection. Also, we will learn how to categorize features and can look up specific features in a glossary. Furthermore, we will explore how to extract features in napari. Definition of feature extraction During feature extraction,

Annotating 3D images in napari

Posted by Mara Lampert, on 30 March 2023

This blog post revolves around generating ground truth in 3D images for segmentation. Therefore, we will define what ground truth is and how we can generate it using napari in a time-efficient way. We will also learn about difficulties of annotating alone or in groups and address possible solutions for both. Challenges of image segmentation

Rescaling images and pixel (an)isotropy

Posted by Mara Lampert, on 2 March 2023

This blog post shows the importance of rescaling 3D image data and what anisotropy of pixels/voxels has to do with it. We will see which different options exist to rescale an image as well as their advantages and limitations. We will also apply a commonly used segmentation algorithm, Voronoi-Otsu-Labeling, on the original and the rescaled

VollSeg and its extension Napari plugins

Posted by varun kapoor, on 15 January 2023

In this article we present the Napari plugin VollSeg and its ongoing extension plugins that we are creating as a part of the CZI grant awarded successively to the non-profit company KapoorLabs, Paris. VollSeg is a Napari plugin for performing semantic, instance segmentation and denoising using the seed pooling approach that requires StarDist and either

Job Opportunity: Scientific Officer on Smart Microscopy at the Centre for Cellular Imaging of Gothenburg University

Posted by Rafael Camacho, on 9 January 2023

We are looking for a new colleague (Scientific Officer) at the Centre for Cellular Imaging of Gothenburg University (CCI). The CCI, in operation since 2003, is a national research infrastructure and one of the leading academic imaging facilities in Sweden providing expertise and access to advanced microscopy to the research community, both locally and at other Swedish

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Microscopy-related articles from our journals

HCR spectral imaging: 10-plex, quantitative, high-resolution RNA and protein imaging in highly autofluorescent samples Development 2024 151: dev202307
filoVision – using deep learning and tip markers to automate filopodia analysis J Cell Sci 2024 137: jcs261274
C omputational tools for quantifying actin filament numbers, lengths, and bundling Biology Open 2024 13: bio.060267

Microscopy-related preprint highlights

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Microscopy-related articles from our journals

Microscopy-related preprint highlights

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