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Rescaling images and pixel (an)isotropy

Posted by , on 2 March 2023

This blog post shows the importance of rescaling 3D image data and what anisotropy of pixels/voxels has to do with it. We will see which different options exist to rescale an image as well as their advantages and limitations. We will also apply a commonly used segmentation algorithm, Voronoi-Otsu-Labeling, on the original and the rescaled
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Microscopy preprints – bioimage analysis tools

Posted by , on 1 March 2023

Here is a curated selection of preprints published recently. In this post, we focus specifically on preprints on bioimage analysis, including an introduction to quantification in microscopy data from Siân Culley and colleagues.
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Image Analyst at Harvard Medical School

Posted by , on 27 February 2023

We are looking for two or more smart, skilled, and enthusiastic bioimage analysts, to join us as soon as possible. Harvard Medical School (HMS) is a world leader in biological and biomedical imaging, with an outstanding community of researchers using cutting-edge microscopy to advance the field. The Image Analysis Collaboratory (IAC) is dedicated to training
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AI4Life First Open Call

Posted by , on 20 February 2023

The European project AI4Life aims at narrowing the gap between life scientists performing biological imaging and developers of AI-based methods to analyze microscopy image data.  This is the first of a series of annual open calls, meant to provide life scientists who have unmet image analysis needs with adequate deep learning enhanced workflows for their
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An interview with José Luis Vázquez Noguera

Posted by , on 7 February 2023

MiniBio: Dr. Jose Luis Vazquez is a researcher at Facultad Politecnica at Universidad Nacional de Asuncion in Paraguay. Between 2004 and 2008, he studied his undergraduate degree in Computer Systems Engineering at Instituto Tecnológico de León in México as an SRE scholar. Between 2009 and 2012 he completed his MSc degree as an Itaipú Binacional
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An interview with Horacio Legal

Posted by , on 31 January 2023

MiniBio: Prof. Horacio Legal is a group leader in the area of Image Analysis at Universidad Nacional de Asuncion in Paraguay. He is also the co-founder of the postgraduate program in the area of Computer Science at this university. Horacio completed his Bachelors degree in Electrical Engineering at the Universidade Federal do Paraná, in Brazil in
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Job Opportunity: Scientific Officer on Smart Microscopy at the Centre for Cellular Imaging of Gothenburg University

Posted by , on 9 January 2023

We are looking for a new colleague (Scientific Officer) at the Centre for Cellular Imaging of Gothenburg University (CCI). The CCI, in operation since 2003, is a national research infrastructure and one of the leading academic imaging facilities in Sweden providing expertise and access to advanced microscopy to the research community, both locally and at other Swedish
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Crick BioImage Analysis Symposium (CBIAS) 2022 - a review

Posted by , on 14 December 2022

Did you want to participate in the Crick BioImage Analysis Symposium (CBIAS) but missed it? Are you planning to join us next year for CBIAS2023 but unsure if it would be relevant for you? We’ve asked three of this year’s participants to tell us about their experience and collated their reports here! We’ll hear from
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First steps for presentation and analysis of calcium imaging data

Posted by , on 6 September 2022

Andrey Andreev, Desiderio AscencioCalifornia Institute of Technology, David Prober labaandreev@caltech.edu Calcium imaging is a widely used tool in neuroscience, and our community now has access to multiple computational tools to process and analyze these data. However, a significant portion of work with imaging data relies on much simpler approaches than offered in these software packages.
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FocalPlane features... Quantitative Phase Imaging

Posted by , on 6 July 2022

In case you missed ‘FocalPlane features…’ last month, here is the recording of the webinar given by Zuzana Nováková, Patrick McCall and Jan Balvan on Thursday 30 June 2022.
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