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An interview with José Luis Vázquez Noguera

Posted by , on 7 February 2023

MiniBio: Dr. Jose Luis Vazquez is a researcher at Facultad Politecnica at Universidad Nacional de Asuncion in Paraguay. Between 2004 and 2008, he studied his undergraduate degree in Computer Systems Engineering at Instituto Tecnológico de León in México as an SRE scholar. Between 2009 and 2012 he completed his MSc degree as an Itaipú Binacional
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An interview with Horacio Legal

Posted by , on 31 January 2023

MiniBio: Prof. Horacio Legal is a group leader in the area of Image Analysis at Universidad Nacional de Asuncion in Paraguay. He is also the co-founder of the postgraduate program in the area of Computer Science at this university. Horacio completed his Bachelors degree in Electrical Engineering at the Universidade Federal do Paraná, in Brazil in
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Job Opportunity: Scientific Officer on Smart Microscopy at the Centre for Cellular Imaging of Gothenburg University

Posted by , on 9 January 2023

We are looking for a new colleague (Scientific Officer) at the Centre for Cellular Imaging of Gothenburg University (CCI). The CCI, in operation since 2003, is a national research infrastructure and one of the leading academic imaging facilities in Sweden providing expertise and access to advanced microscopy to the research community, both locally and at other Swedish
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Crick BioImage Analysis Symposium (CBIAS) 2022 - a review

Posted by , on 14 December 2022

Did you want to participate in the Crick BioImage Analysis Symposium (CBIAS) but missed it? Are you planning to join us next year for CBIAS2023 but unsure if it would be relevant for you? We’ve asked three of this year’s participants to tell us about their experience and collated their reports here! We’ll hear from
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First steps for presentation and analysis of calcium imaging data

Posted by , on 6 September 2022

Andrey Andreev, Desiderio AscencioCalifornia Institute of Technology, David Prober labaandreev@caltech.edu Calcium imaging is a widely used tool in neuroscience, and our community now has access to multiple computational tools to process and analyze these data. However, a significant portion of work with imaging data relies on much simpler approaches than offered in these software packages.
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FocalPlane features... Quantitative Phase Imaging

Posted by , on 6 July 2022

In case you missed ‘FocalPlane features…’ last month, here is the recording of the webinar given by Zuzana Nováková, Patrick McCall and Jan Balvan on Thursday 30 June 2022.
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An interview with Federico Lecumberry

Posted by , on 5 July 2022

MiniBio: Federico Lecumberry is an Associate Professor in Signal Processing and Machine Learning at the Department of Electrical Engineering at the Faculty of Engineering of Universidad de la Republica in Uruguay. He is also an Associate Researcher with the Advanced Bioimaging Unit of Institut Pasteur de Montevideo. He completed his BSc, MSc and PhD degrees
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Explorative image data science with napari

Posted by , on 23 May 2022

When analysing microscopy image data of biological systems, a major bottleneck is to identify image-based features that describe the phenotype we observe. For example when characterising phenotypes of nuclei in 2D images, often questions come up such as “Shall we use circularity, solidity, extend, elongation, aspect radio, roundness or Feret’s diameter to describe the shape
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#GliaMorph - a tool to analyse glial cell morphology in 3D

Posted by , on 17 May 2022

Contents What is #GliaMorph? What can you do and analyse with #GliaMorph? Links to manuscripts and data Contributions and Feedback Thanks to all contributors and people providing feedback References What is GliaMorph? GliaMorph is a toolkit implemented as Fiji Macros to allow modular application to process and analyse Müller glia morphology in the retina. During
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FocalPlane features... Machine Learning

Posted by , on 3 March 2022

In case you missed ‘FocalPlane features…’ last month, here is the recording of the webinar given by Ricardo Henriques (Instituto Gulbenkian de Ciência), Estibaliz Gómez de Mariscal (Instituto Gulbenkian de Ciência) and Martin Weigert (EPFL) on Wednesday 16 February 2022.
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